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Mikoto is one of the main heroines from the science side in A Certain Magical Index, as well as the main protagonist and the titular character of A Certain Scientific Railgun. Despite her rich background, Mikoto had a typical childhood.
At a young age, she was discovered to be a Level 1 Electromaster (電撃使い (エレクトロマスター) Erekutoromasutā, lit. “Electricity User”), espers who have the ability to generate and control electricity, and see beyond the visible electromagnetic spectrum. She enrolled into Academy City to train her powers and worked very hard until her powers were ranked Level 5. As an electromaster, she can generate and manipulate electricity which she can use to shock opponents, hack into electronics like computer networks and security systems, and use electromagnetism to cling to surfaces or manipulate iron particles into a chain-sword whip. Mikoto’s signature move is her ability to shoot metal projectiles such as coins at high destructive speeds, hence her nickname, “Railgun” (超電磁砲 (レールガン) Rērugan, lit. “Super Electromagnetic Cannon”). If she is in a bad mood, she will sometimes let out bursts of electricity describing her emotional stress, usually resulting in power failures or in worse cases, a thunder storm that causes citywide blackouts.
Mikoto attends Tokiwadai Middle School. To most people, she is considered a proper lady, but in reality, she has a short-tempered, prideful, and improper attitude with some tomboyish tendencies and insecurities, a fact few other characters know. She is fond of cute, childish things, such as flowery pajamas and Gekota, the popular frog mascot franchise. Contrary to what she claims, she has a strong sense of morals and hates injustice. Mikoto has a one-sided rivalry with Tōma, who, even after experiencing permanent amnesia, nicknames her “Biri Biri” (ビリビリ, the Japanese onomatopoeia of electric shocks, “Zapper” in the English dub, “Sparky” in the English manga), ever since their first meeting before the events of the first novel when he first dissipated her electricity after he unsuccessfully tried to rescue her. Since that incident, she is always trying to have a proper match with Tōma and defeat him despite his many attempts to avoid conflict with her.
When Mikoto was young, she was tricked into giving the city’s scientists her DNA under the pretense of finding the cure for Duchenne muscular dystrophy; their actual goal to create military-grade combat clones of her. When it was discovered that the clones did not have the same power level as Mikoto, they were instead used in a project called “Level 6 Shift”, intended to make Accelerator the first level 6 esper by having him kill 20,000 clones. The events of how Mikoto tried to stop the project are briefly mentioned in the third novel and expanded upon in the Railgun manga. When all of her attempts failed, she contemplates letting herself be killed by Accelerator, as an unexpected variable to destroy Tree Diagram’s calculations. However, it is not until Tōma intervenes and beaten Accelerator, proving Accelerator to be really weak, that the project is canceled and the remaining 9969 surviving Sisters are spared.
After the events of the third novel, she eventually develops strong romantic feelings towards Tōma but is unable to express them due to her insecurities and the fact other girls are also interested in him, and he treats her like a tsundere. Even though she and Tōma tend to bicker and argue with each other, they share a friendly relationship. During the events of the 14th novel, she calls Tōma, who is on a trip to Avignon, France when he is attacked by Terra of the Left. Even though his cellphone is damaged, Mikoto is still able to listen in on the conversation on the other end and is shocked to hear from Terra that Tōma actually lost his memories and has been hiding this fact from his friends all this time. Confused, she confronts Tōma when he returns to Academy City in the 16th novel; she is relieved that Tōma still remembers the incident with Accelerator and the Sisters. After that, Mikoto overcomes her initial confusion regarding her concern for him and realizes she loves Tōma. She reappears in volume 20, when upon learning Russia might launch missiles against Academy City and seeing Tōma in a live TV report from Russia, Mikoto heads to Russia after hijacking a jet from the Academy City Invasion Force (incidentally, said jet was ordered to find and capture Tōma). After arriving in Russia, she and Misaka 10777 head towards a nuclear military base to stop the missiles from launching. Near the end of volume 22, she tries to rescue Tōma from the falling Star of Bethlehem but he stays behind in order to stop an Archangel. After the Star’s destruction, she tries to find him but only finds his cellphone strap.
During the Daihasei Festival, Misaka 10032 is kidnapped by Gensei Kihara whose scheme is to gather the requirements for his attempts to make Mikoto a Level 6. Gensei required Exterior, the giant cultivated brain used by Misaki in order to infect the Misaka Network with the electric virus and get around its defenses. His forced attempt in creating a level 6 involves sending Mikoto’s power out of control. At 53% of the theoretical limit her mind would transform into something from a different dimension. Afterwards, Mitori likely used the Exterior to guide Mikoto’s psyche. She brings out her fears and anger towards the city, and has her attack the Windowless Building, saying bad things would happen and someone will always get hurt. Mikoto complies and uses her newfound power to make an incredibly powerful beam of electricity descend from the overcast sky, though the Windowless Building survives. Tōma, allied with Sogiita Gunha, are confronted by Mikoto’s huge mass made of metal and rubble formed from various metal containing structures. Mikoto’s subconscious wakes up, but she has no control over her transformed body, as the great black sphere of energy continues to grow, and energy exudes from the ground. The sphere’s power was too great for Tōma’s right arm to bear and it is ripped from his body intact. At that moment, the Dragon Strike in the form of eight other dragons emerges, and then bites the black spheres and makes Mikoto’s transformation crumble. With Mikoto restored, Tōma comforts her by saying that there are people who are working to help her change bit by bit; she agrees with tears in her eyes.
After the Third World War, Mikoto returns to Academy City feeling depressed over failing to save Tōma, but is relieved when she is reunited with him, as he survived after returning to Academy City. Later, she was one of the few who were involved in an operation in Hawaii. She intended to enroll in Tōma’s school during the Ichihanaran Festival, though this was interrupted by Misaki Shokuhō.